| 12th Street / Oakland City Center Station | 1245 Broadway | Oakland | CA | 94612 | US | A, C | Yellow Line, Orange Line | | | | | | | | | | | | | | | |
| 16th Street Mission Station | 2000 Mission Street | San Francisco | CA | 94110 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
| 19th Street Oakland Station | 1900 Broadway | Oakland | CA | 94612 | US | A, C | Yellow Line, Orange Line | | | | | | | | | | | | | | | |
| 24th Street Mission Station | 2800 Mission Street | San Francisco | CA | 94110 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
| Antioch | 1600 Slatten Ranch Road | Antioch | CA | 94509 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Ashby Station | 3100 Adeline Street | Berkeley | CA | 94703 | US | C, E | Orange Line, Red Line | | | | | | | | | | | | | | | |
| Balboa Park Station | 401 Geneva Avenue | San Francisco | CA | 94112 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
| Bay Fair Station | 15242 Hesperian Blvd | San Leandro | CA | 94578 | US | B, C, D | Blue Line, Orange Line, Green Line | | | | | | | | | | | | | | | |
| Berryessa/North San Jose | 1620 Berryessa Road | San Jose | CA | 95133 | US | C, D | Orange Line, Green Line | | | | | | | | | | | | | | | |
| Castro Valley Station | 3301 Norbridge Dr | Castro Valley | CA | 94546 | US | B | Blue Line | | | | | | | | | | | | | | | |
| Civic Center Station | 1150 Market Street | San Francisco | CA | 94102 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
| Coliseum / Oakland Airport Station | 7200 San Leandro St | Oakland | CA | 94621 | US | B, C, D, F | Blue Line, Orange Line, Green Line, Beige Line | | | | | | | | | | | | | | | |
| Colma Station | 365 D Street | Colma | CA | 94014 | US | A, E | Yellow Line, Red Line | | | | | | | | | | | | | | | |
| Concord Station | 1451 Oakland Avenue | Concord | CA | 94520 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Daly City Station | 500 John Daly Blvd | Daly City | CA | 94014 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
| Downtown Berkeley Station | 2160 Shattuck Avenue | Berkeley | CA | 94704 | US | C, E | Orange Line, Red Line | | | | | | | | | | | | | | | |
| Dublin/Pleasanton Station | 5801 Owens Dr | Pleasanton | CA | 94588 | US | B | Blue Line | | | | | | | | | | | | | | | |
| El Cerrito del Norte Station | 6400 Cutting Blvd | El Cerrito | CA | 94530 | US | C, E | Orange Line, Red Line | | | | | | | | | | | | | | | |
| El Cerrito Plaza Station | 6699 Fairmount Avenue | El Cerrito | CA | 94530 | US | C, E | Orange Line, Red Line | | | | | | | | | | | | | | | |
| Embarcadero Station | 298 Market Street | San Francisco | CA | 94111 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
| Fremont Station | 2000 BART Way | Fremont | CA | 94536 | US | C, D | Orange Line, Green Line | | | | | | | | | | | | | | | |
| Fruitvale Station | 3401 East 12th Street | Oakland | CA | 94601 | US | B, C, D | Blue Line, Orange Line, Green Line | | | | | | | | | | | | | | | |
| Glen Park Station | 2901 Diamond Street | San Francisco | CA | 94131 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
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| Lafayette Station | 3601 Deer Hill Road | Lafayette | CA | 94549 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Lake Merritt Station | 800 Madison Street | Oakland | CA | 94607 | US | C, D | Orange Line, Green Line | | | | | | | | | | | | | | | |
| MacArthur Station | 555 40th Street | Oakland | CA | 94609 | US | A, B | Yellow Line, Blue Line | | | | | | | | | | | | | | | |
| Millbrae Station | 200 North Rollins Road | Milllbrae | CA | 94030 | US | E | Red Line | | | | | | | | | | | | | | | |
| Milpitas | 1755 S. Milpitas Blvd | Milpitas | CA | 95035 | US | C, D | Orange Line, Green Line | | | | | | | | | | | | | | | |
| Montgomery Station | 598 Market Street | San Francisco | CA | 94104 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
| North Berkeley Station | 1750 Sacramento Street | Berkeley | CA | 94702 | US | C, E | Orange Line, Red Line | | | | | | | | | | | | | | | |
| North Concord / Martinez Station | 3700 Port Chicago Highway | Concord | CA | 94520 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Oakland Internation Airport | 4 Airport Drive | Oakland | CA | 94621 | US | F | Beige Line | | | | | | | | | | | | | | | |
| Orinda Station | 11 Camino Pablo | Orinda | CA | 94563 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Pittsburg / Bay Point Station | 1700 West Leland Road | Pittsburg | CA | 94565 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Pittsburg Center | 2099 Railroad Avenue | Pittsburg | CA | 94565 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Pleasant Hill Station | 1365 Treat Blvd | Walnut Creek | CA | 94597 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Powell Station | 899 Market Street | San Francisco | CA | 94102 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line | | | | | | | | | | | | | | | |
| Richmond Station | 1700 Nevin Avenue | Richmond | CA | 94801 | US | C, E | Orange Line, Red Line | | | | | | | | | | | | | | | |
| Rockridge Station | 5660 College Avenue | Oakland | CA | 94618 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| San Bruno Station (BART) | 1151 Huntington Avenue | San Bruno | CA | 94066 | US | A, E | Yellow Line, Red Line | | | | | | | | | | | | | | | |
| San Francisco International Airport (SFO) Station | International Terminal, Level 3 | San Mateo County | CA | 94128 | US | A, E | Yellow Line, Red Line | | | | | | | | | | | | | | | |
| San Leandro Station | 1401 San Leandro Blvd | San Leandro | CA | 94577 | US | B, C, D | Blue Line, Orange Line, Green Line | | | | | | | | | | | | | | | |
| South Hayward Station | 28601 Dixon Street, Hayward, CA 94544 | Hayward | CA | 94544 | US | C, D | Orange Line, Green Line | | | | | | | | | | | | | | | |
| South San Francisco Station (BART) | 1333 Mission Road | South San Francisco | CA | 94080 | US | E | Red Line | | | | | | | | | | | | | | | |
| Union City Station | 10 Union Square | Union City | CA | 94587 | US | C, D | Orange Line, Green Line | | | | | | | | | | | | | | | |
| Walnut Creek Station | 200 Ygnacio Valley Road | Walnut Creek | CA | 94596 | US | A | Yellow Line | | | | | | | | | | | | | | | |
| Warm Springs/South Fremont | 45193 Warm Springs Blvd, Fremont | Fremont | CA | 94539 | US | C, D | Orange Line, Green Line | | | | | | | | | | | | | | | |
| West Dublin/Pleasanton | 6501 Golden Gate Drive | Dublin/Pleasanton | CA | 94568 | US | B | Blue Line | | | | | | | | | | | | | | | |
| West Oakland Station | 1451 7th Street | Oakland | CA | 94607 | US | A, B, D, E | Yellow Line, Blue Line, Green Line, Red Line |